Databases and Information Resources

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Data, Resources, Tools and Programs for SEQUEROME have been obtained and utilized from the following sources -

BLAST from NCBI,
PDB,
EXPASY,
eF-site
1. Kinoshita, K., Furui, J. , and Nakamura, H.: Identification of Protein Functions from a Molecular Surface Database, eF-site, J. Struct Funct Genomics, 2:9-22, (2001)
2. Nakamura, H., and Nishida, S.: Numerical calculations of electrostatic potentials of protein-solvent systems by the self consistent boundary method.J. Phys. Soc. Jpn., 56:1609-1622, (1987)
3. Connolly, M. L.: Solvent-accessible surfaces of proteins and nucleic acids. Science, 221:709-713, (1983)
Dipole moment server, Clifford Felder and Joel Sussman, Dept. of Structural Biology, Weizmann Institute, 761000 Rehovot, Israel
REBASE - Dr. Richard J. Roberts and Dana Macelis - http://rebase.neb.com/rebase/rebtools.html
The Sequence Manipulation Suite: Stothard P (2000); JavaScript programs for analyzing and formatting protein and DNA sequences. Biotechniques 28:1102-1104.
PredictNLS server (prediction and analysis of nuclear localization signals) - Murat Cokol, Rajesh Nair and Burkhard Rost - EMBO reports 1: 411-415
SMART - Simple Modular Architecture Research Tool - Schultz et al. (1998) Proc. Natl. Acad. Sci. USA 95, 5857-5864 AND Letunic et al. (2004) Nucleic Acids Res 32, D142-D144