Search the World-Wide-Web using
any fragment of DNA, RNA or Protein Sequence in the box below...



The Web  SEQUEROME for detailed analysis

 

InstaSeq sample searches

  1. Report from Institute of Bioinformatics, Bangalore (Gopa Mishra), India

  2. Report from Bioinformatics and Computational Biosciences Unit, Georgetown University, Washington DC, USA

  3. A Note from Google™...

Report from Bioinformatics and Computational Biosciences Unit, Georgetown University, Washington DC, USA

A random fragment from the following NCBI accession numbers were directly pasted into the InstaSeq search box. Following are the results of sample searches...*

  1. ** X16061 **  - Glucose oxidase from Aspergillus Niger

    1. PNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSA 

                                                               i.      A single link to PDF document - http://www.zib.de/MDGroup/temp/lecture/l3/protein2/vor3.pdf

    1. ETVELATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAA

                                                               i.      Link to a Meta file - http://bioinfo.pl/Meta/target.pl?id=8036&file=foldfit

  1. NM_001017371 – Human protein, Transcription factor

    1. GPPSPGDDEEEAAAAAGAPAAAGATGDLASAQLGGAPNRWE

                                                               i.      Link to ExPASy and Harvester files

1.      http://www.expasy.org/cgi-bin/niceprot.pl?Q02447

2.      http://harvester.embl.de/harvester/Q69B/Q69B27.htm

3.      http://expasy.cbr.nrc.ca/cgi-bin/sprot-search-de?SEARCH=SP3_HUMAN

    1. cctcgcccgcctgccgcctttttgtgcgcg

                                                              i.      **Link to USPTO patent record**

1.      http://appft1.uspto.gov/netacgi/nph-Parser?Sect1=PTO2&Sect2=HITOFF&p=1&u=%2Fnetahtml%2FPTO%2Fsearch-bool.html&r=35&f=G&l=50&co1=AND&d=PG01&s1='davidson%2C+beverly'.IN.&OS=IN/&RS=IN/

  1. **DQ014551** – Tobacco mosaic virus, coat protein

    1. QRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNRII

                                                               i.      Link to PDBid – 1ei7_B (3D structure) from structure prediction service by CUBIC, Columbia

  1. NP_002736  - Mitogen activated protein kinase

    1. MAAAAAAGAGPEMVRGQVFDVG 

                                                               i.      Upto 32 results including links to Uniprot, HPRD. Occasional transient links to snapshots of 3D structure

  1. NP_003485

    1. RNRFLGEAKVPLREVLATPSLSASFNAPLLDTKKQPTGASLVLQVSYTPLPGAVPLFPPPTP

                                                               i.      Links to ExPASy servers

1.      http://www.expasy.org/cgi-bin/niceprot.pl?O75923

  1. P04156 - major prion protein precursor

    1. ANLGCWMLVLFVATWSDLGLCKKRPKPGGWNTGGSRYPG

                                                               i.      Upto 130 links all indicating to the major prion protein precursor

  1. NM_001099

    1. TGTGACTTTGGTGTTTCGGCATGGAGACCGAAGTCCCATTGACACCTTTCC

                                                               i.      Links to Flat-files from DDBJ servers  and Plasma proteome database

1.      Link 1

2.      Link 2

  1. NM_001023582

    1. GCGGTTGTAGTTGATCTCCGGAGTTT – Retinitis pigmentosa related gene

                                                               i.      Links to Harvester and ExPASy servers

1.      Link 1

2.      Link 2

  1. ** AJ878594 ** - Algae photosystem

    1. LEEVSRKIFSAHFGQLSIIFLWISGMHFHGAYFSNYSAWLT  - partial gene sequence for a photosystem related gene from an algae (diatom) Stephanodiscus hantzschii

                                                               i.      A single record/link pointing to a flat file from a personal homepage of a Botany dept in Dusseldorf Univ

  1. AY427568

    1. Gene from Rice – Oryza sativa

                                                               i.      No result from pasting any part of DNA sequence

                                                             ii.      Go to SEQUEROME – Translate the product – Take the first line and paste into InstaSeq

1.      A single link to protein view page

 

 

Search results as carried out on Monday, June 13, 2005

Since the results of the WWW search are transient and fleeting, the amount and type of links can vary significantly over time. InstaSeq code runs above Google which basically parses the input sequence into specific strings. This processed user queries are finally submitted to Google when then returns a series of highly relevant links/documents pertaining the nucleotide/peptide sequence. Hence it is very much possible to get significant variations in link retrievals for a given query over a period of time. This variation is explained by the Google's page-ranking technology.

Following are excerpts from an email from Google explaining the variation in the quality and quantity of link retrievals for any input query.

"...our search results change regularly as we update our index. We find new sites, incorporate updates to existing sites, and lose other sites, which also means that many sites' ranking will change.

It's our intent to represent the content of the internet fairly and accurately. We don't manually assign keywords to sites, nor do we hand adjust the ranking of sites in our search results. Sites' positions are determined automatically by many factors, which are explained in more detail at http://www.google.com/technology/index.html

Regards,
The Google Team
"

About InstaSeq   Sample searches    Contact

Searching the web for sequence related information...
 

Developed by Nick Bennett and Natarajan Ganesan. Search powered by Google TM
© copyright 2005. All rights reserved. Created and maintained by Natarajan Ganesan