
Operations performed by Command buttons
DNA Commands
Protein Commands
- View Structure - Seen only in 'Results' palette - Allows
viewing a 3D structure of a selected record from BLAST report that displays a
PDBid
- ProtParam - Returns all physicochemical parameters of an input
peptide sequence from ExPASy
server.
- View NCBI page - Seen only in 'Results' palette - Displays
the NCBI record of a selected sequence from a BLAST report
- Prot Stats - Returns statistical results on amino acid composition
of an input sequence. Tool adapted from
Sequence Manipulation
Suite.
- Protein pattern - Identifies user defined-annotated sequences
within an input sequence. Tool adapted from
Sequence Manipulation
Suite.
- Dipole Moment - Seen only in 'Results' palette -
Provides electrostatic surface features of a Functional Site from BLAST report
that displays a PDBid. Tool linked to
Dipole Moment Server.
- ef Site - Seen only in 'Results' palette - Calculates dipole
moment of protein structures from BLAST report that displays a PDBid. Tool
linked to eF-Site
- 2˚ Structure Prediction - Predicts secondary structure of a protein
of an input sequence. Tool linked to
SMART
- NLS predict - Predicts sites containing Nuclear Localization
Signals in an input sequence. Tool linked to
NLS predict
© copyright 2004. All rights
reserved. Created and maintained by
Natarajan Ganesan.