Students will participate in an enriching 16-week internship with bioinformatics experts at Georgetown University or bioinformatics, biomedical and biotechnology institutions in the Washington DC area, including:
Predictive modeling of drug induced toxicology via QSAR analysis of SEND datasets
Rodney Moore Jr. Mentor: Dr. Kevin Snyder, U. S. Food and Drug Administration, Center for Drug Evaluation and Research, Office of New Drugs Date/Time: December 1st, 2022 at 10:00am.…
Integration of Gene Dependency Scores and scRNA-Seq Data Reveals ACTN1 and CD44 as Potential Targets in Glioblastoma
Madison Sharp Mentor: Dr. Nagi Ayad, Department of Oncology, Georgetown University Medical Center Georgetown University Medical Center Date/Time: August 23rd, 2022 at 1:00pm. Abstract:…
Generation of computational pipeline to assess the phase separation potential of oncogenic fusion proteins
Teya Dragovic Mentors: Dr. Sreejith Nair, Department of Oncology – Georgetown University Medical Center; Dr. Matthew McCoy, Innovation Center for Biomedical Informatics (ICBI) – Georgetown…
Non-Coding Transcriptomic and Epigenetic Changes Implicated in Ovarian Cancer Platinum Chemoresistance
Arun Krishnaraj Mentors: Dr. Sreejith Nair, Department of Oncology – Georgetown University Medical Center; Dr. Matthew McCoy, Innovation Center for Biomedical Informatics (ICBI) -…
Gene Expression Associated with Acute myeloid leukemia using Gene Enrichment Analysis (GSEA)
Yohana Alemseged Mentors: Dr. Laura Harris, Harris Interdisciplinary Research Date/Time: August 23rd, 2022 at 2:00pm. Abstract: Gene expression is a powerful process which uses the…
Analysis of the metabolomic profile in serum of irradiated nonhuman primates treated with BIO 300-1, a radiation countermeasure
Zihao Zhang Mentor: Dr. Amrita Cheema, Professor of Oncology/ Associate Director: Center for Metabolomic Studies, Lombardi Comprehensive Cancer Center, Georgetown University Date/Time: August…
LIME, A High-Throughput Metabolite Annotation Tool
Bowen Yang Mentors: Dr. Tytus Mak, Mass Spectrometry Data Center, National Institute of Standards and Technology; and Dr. Evagelia C Laiakis, Department of Oncology, Georgetown University…
Predictive modeling of drug induced toxicology via QSAR analysis of SEND datasets
Rodney Moore Jr. Mentor: Dr. Kevin Snyder U. S. Food and Drug Administration, Center for Drug Evaluation and Research, Office of New Drugs Date/Time: August 23rd, 2022 at 3:00pm. Abstract:…
Kallisto Isoform-Level Analysis of Platelet Transcript Data: A rapid, scalable RNA-Seq Workflow
Jacob Youkilis Mentor: Dr. Rasika Mathias, Division of Allergy and Clinical Immunology, Johns Hopkins University School of Medicine Date/Time: August 23rd, 2022 at 3:20pm.…
Improvement of glycan structure inference from glycan images using deep-learning-based object detection
Michelle Vesser Mentor: Dr. Nathan Edwards, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University Date/Time: August 23rd, 2022 at 3:40pm. Abstract: Glycan…
Predicting novel proteins by exon shuffling using human mRNA
Kurt Denning Mentors: Dr. CR Vinayaka, Georgetown University and Nagarajan Pattabiraman, MolBoxLLC Date/Time: August 23rd, 2022 at 4:00pm. Abstract: In this project, the inspiration was…
Developing a reproducible computational pipeline for detecting lncRNA based on RNA-seq data
Minghan Wu Mentors: Dr. Matthew McCoy, Innovation Center for Biomedical Informatics (ICBI ) and Department of Oncology, Georgetown University Medical Center; and Dr. Sreejith Nair, Oncology…
Cell-specific SNV discovery using barcode-stratified scRNA-Seq data
Ni Gao Mentors: Dr. Nathan Edwards, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University. Date/Time: May 3rd, 2022 at 12:00pm. Abstract: Currently, the…
Systems Analysis of Essential Autism Genes in Early Mammalian Development
Josephine Millard Mentors: Dr. Sharmila Basu, MindSpec, Inc.; and Dr. Karen Ross, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University. Date/Time: May 3rd,…
Establish a knowledge graph of tumor immunity-related probiotics and automatically predict potential new drugs
Zhichen Gao Mentor: Yongliang Yang (Doctoral Supervisor and Deputy Dean of the School of Life Science and Technology, Dalian University of Technology.) Date/Time: December 7, 2021 at…
Exploiting RAS dimers for ligand discovery
Dillon Chu Mentor: Dr. Trent Balius, RAS Com Chem Team, NCI RAS Initiative, Frederick National Lab for Cancer Research. Date/Time: August 24, 2021 at 3:40pm Abstract: The RAS proteins are…
Developing a reproducible, adaptable data analysis pipeline for Nanopore RNA-seq data with Snakemake, a Python-based workflow engine
Vincent Miller Mentor: Dr. Vishal Koparde, Frederick National Laboratory for Cancer Research. Date/Time: August 24, 2021 at 3:20pm Abstract: Over the past decade, there has been an…
A DISCUSSION on SOFTWARE for CRISPR DATA ANALYSIS: A Comparison between CRISPRPIC and CRISPResso2
Jemima Kamran Mentor: Dr. Desiree Tillo, Frederick National Laboratory for Cancer Research. Date/Time: August 24, 2021 at 3:00pm Abstract: Cultured regularly interspaced short palindromic…
What types of disease dynamics result in elevated rates of adaptation?
Sarah Jo McGeady Mentor: Dr. Lawrence Uricchio, Department of Biology, Tufts University. Date/Time: August 24, 2021 at 2:40pm Abstract: Recent literature has explored the intersection…
Investigating Platelet Reactivity in Diabetic Patients of the Framingham Heart Study
Daniall Masood Mentor: Dr. Melissa Chan, Senior Research Fellow at the Framingham Heart Study at The National Institutes of Health. Date/Time: August 24, 2021 at 2:20pm Abstract: The…
Application of SNP2SIM to Venetoclax Resistant Variants in BCL2
Brooke Szczesny Mentor: Dr. Matthew McCoy, Innovation Center for Biomedical Informatics (ICBI), Department of Oncology, Georgetown University Medical Center. Date/Time: August 24, 2021…
Using simulations of protein dynamics to understand BCL2 binding with Venetoclax
Wanyue Zou Mentor: Dr. Mathew McCoy, Innovation Center for Biomedical Informatics (ICBI) and Department of Oncology, Georgetown University Medical Center. Date/Time: August 24, 2021 at…
Development of Original BCL2-Venetoclax Bound Structures for Use in Molecular Dynamic Simulations
Helen Ashdown Mentor: Dr. Matthew McCoy, Innovation Center for Biomedical Informatics (ICBI), Department of Oncology, Georgetown University Medical Center. Date/Time: August 24, 2021 at…
A view to a kill: System-level analysis of metabolism in an algicidal bacterium
Genevieve Parkey Mentors: Dr. Ali Navid and Dr. Helena Van Tol, Biochemical and Biophysical Systems Group, Lawrence Livermore National Laboratory. Date/Time: August 24, 2021 at…
Analysis of drug affected clusters in a multi-PTM correlation network
Churan Huang Mentor: Dr. Karen Ross, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University Medical Center. Date/Time: December 3, 2020 at 8:00am Abstract:…
Shortest-Path Network Analysis of PTM Site Changes in Non-Small Cell Lung Cancer
Yu Lin Mentor: Dr. Karen Ross, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University Medical Center. Date/Time: August 25, 2020 at 3:20pm Abstract:…
Identifying Prospective Markers for Thyroid Status Using a Differential Gene Expression Analysis Workflow
Peter Chang Mentor: Drs. Karen Ross and Mark Danielsen, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University Medical Center. Date/Time: August 25, 2020 at…
Extracting Transitions from GPTwiki Glycopeptide Database
Yujian Long Mentor: Dr. Nathan Edwards, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University Medical Center. Date/Time: August 25, 2020 at…
Glycan Structure Extraction from Scientific Literature
Nhat Duong Mentor: Dr. Nathan Edwards, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University Medical Center. Date/Time: August 25, 2020 at…
Transcription Factor Variant Mapping
Jiayu Fu Mentor: Dr. Matthew McCoy, Innovation Center for Biomedical Informatics, Department of Oncology and Department of Biostatistics, Bioinformatics and Biomathematics, Georgetown…
Enrichment of Variant Information for the Variant Standardization and Annotation Pipeline
Christina Coppola Mentor: Dr. Jennifer Lee, Bioinformatics Applications Development Center (BADC) within the National Cancer Institute’s Frederick National Lab for Cancer…
Predicting Resistance to Bcl2 antagonists using an In-Silico Functional Assay
Shannon Cosgrove Mentor: Dr. Matthew McCoy, Innovation Center for Biomedical Informatics, Department of Oncology and Department of Biostatistics, Bioinformatics and Biomathematics, Georgetown…
Analysis of PySam Versioning Changes
Patrick Chen Mentor: Dr. Nathan Edwards, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University Medical Center. Date/Time: August 25, 2020 at…
Orthlog Inference using Multiple-Sequence Alignment
Zekai Ding Mentor: Dr. Nathan Edwards, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University Medical Center. Date/Time: August 25, 2020 at…
Ontological Enumeration of SARS-CoV-2 Proteoforms
Ying Cheng Mentor: Dr. Darren Natale, Protein Information Resource, Georgetown University Medical Center. Date/Time: August 25, 2020 at 5pm Abstract: Recently, as we know, SARS-CoV-2…
Analysis of metabolomics data from radiation in nonhuman primate serum
Samantha Shen Mentors: Dr. Amrita Cheema, Department of Oncology and Biochemistry and Molecular & Cellular Biology, Metabolomics Shared Resource, and Dr. and Yaoxiang Li, Department of…
Metagenomic Analysis of the Astronaut Microbiome
Zelaikha Yosufzai Mentors: Drs. Crystal Jaing and Michael Morrison, Lawrence Livermore National Laboratory Genomics Group. Date/Time: August 25, 2020 at 1-5pm Abstract: The human…
Electrophysiological Changes in Cortical-Striatal Synaptic Function in Mice with Ephrin-A5 Gene Deletions
Mark Gabriel Mentor: Dr. Lawrence Kromer, Department of Neuroscience, Georgetown University. Date/Time: June 26, 2020 at 3pm Abstract: Understandings how neural connections form and are…
Using multiplex imaging to understand spatial heterogeneity in breast cancer
Yingqi Li Mentors: Dr. Simina Boca, Innovation Center for Biomedical Informatics, Department of Oncology and Department of Biostatistics, Bioinformatics and Biomathematics, Georgetown…
Network Analysis to Identify Key Proteins and Pathways Targeted During Herpesvirus Infection
Zachary S. Wallace Mentor: Dr. Richard H. Scheuermann, Department of Bioinformatics, J. Craig Venter Institute Date/Time: August 27, 2019 at 2pm Location: Room 1300, Harris…
Epigenetic control of CD4 expression in African green monkeys
Sanjana Shah Mentor: Dr. Jason Brenchley, National Institute of Allergy and Infectious Diseases, National Institutes of Health Date/Time: August 27, 2019 at 2pm Location: Room 1300,…
Increasing the diagnostic yield of an autoinflammatory disease cohort by copy number variant analysis
Brynja Matthíasardóttir Mentor: Dr. Ivona Aksentijevich, National Human Genome Research Institute, National Institutes of Health Date/Time: August 27, 2019 at 2pm Location: Room…
Comparison of Phylogenetic and Phenetic Clustering
Lorena Sandoval Mentor: Dr. Terry Hyslop, Department of Biostatistics and Bioinformatics, Duke University Date/Time: August 27, 2019 at 2pm Location: Room 1300, Harris Building In…
Molecular profiling breast cancer recurrence: a meta-analysis
Shruti Gautam Mentors: Dr. Robert Clarke, Department of Oncology, Georgetown University; Lu Jin, Department of Oncology, Georgetown University Date/Time: August 27, 2019 at…
Curation of clinical trials for Duchenne Muscular Dystrophy (DMD)
Bin Hai Mentor: Dr. Simina Boca, Innovation Center for Biomedical Informatics, Department of Oncology and Department of Biostatistics, Bioinformatics and Biomathematics, Georgetown…
Predictive modeling of brain cancer outcomes based on molecular profiling data
Rebecca Fuchs Mentor: Dr. Yuriy Gusev, Innovation Center for Biomedical Informatics, Department of Oncology, Georgetown University Date/Time: August 27, 2019 at 2pm Location: Room…
Improved retention-time estimation for glycopeptide extracted-ion chromatograms
Yixin Wu Mentor: Dr. Nathan Edwards, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University Date/Time: August 27, 2019 at 2pm Location: Room 1300,…
RNA-Editing in Thyroid Cancer
Yonghyun Kwon Mentor: Dr. Anelia Horvath, Department of Biochemistry & Molecular Medicine, George Washington University Date/Time: May 13, 2019 at 1:30pm Location: Room 1300, Harris…
Emergence of Known and Novel Healthcare-Associated Pathogens in the Gut Microbiome after Antibiotic Treatment
Lacy Walker Mentor: Dr. Zhihua Li, The Food and Drug Administration (CDER/OMPT/CDER/OTS/OCP/DARS) Date/Time: May 13, 2019 at 1:30pm Location: Room 1300, Harris Building Oral…
Indeed 2.0
Kian Ghaffari Mentor: Dr. Habtom Ressom, Department of Oncology, Georgetown University Medical Center Date/Time: May 13, 2019 at 1:30pm Location: Room 1300, Harris…
Designing a Framework for a MS/MS Library to be Utilized for Compound Identification
Presenter: Meth Jayatilake
Mentor: Dr. Amrita Cheema, Department of Oncology and Biochemistry and Molecular & Cellular Biology; Director of Metabolomics Shared Resource, Georgetown University Medical Center.
Location: August 28, 2018, 2:00pm, Room 1300, Harris Building…
Semantic Glycan Data Modelling using Semantic MediaWiki
Presenter: Xuewei Chen.
Mentor: Dr. Nathan Edwards, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University.
Location: August 28, 2018, 2:00pm, Room 1300, Harris Building…
Glycan structure parsing, alignment, and visualization
Presenter: Wenjin Zhang
Mentor: Dr. Nathan Edwards, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University.
Location: August 28, 2018, 2:00pm, Room 1300, Harris Building…
R Shiny App for Comparing Quantified RNA Expression Datasets
Presenter: Qingyuan Ma
Mentor: Dr. Matthew McCoy, Innovation Center for Biomedical Informatics, Department of Oncology and Department of Biostatistics, Bioinformatics and Biomathematics, Georgetown University.
Location: August 28, 2018, 2:00pm, Room 1300, Harris Building…
Optimization and Complementing of Proteomic Consistency Metrics Reporting Pipeline
Presenter: Jiahao Huang
Mentor: Dr. Shaojun Tang, Innovation Center for Biomedical Informatics, Georgetown University.
Location: August 28, 2018, 2:00pm, Room 1300, Harris Building…
Bioinformatic software development for analysis of admixed populations
Presenter: Guangchuan Ji
Mentor: Dr. Simina Boca, Innovation Center for Biomedical Informatics, Department of Oncology and Department of Biostatistics, Bioinformatics and Biomathematics, Georgetown University.
Location: August 28, 2018, 2:00pm, Room 1300, Harris Building…
Targeted RNASeq Analysis of Fanconi Anemia Patients
Presenter: Vibhish Raghuraman.
Mentor: Dr. Settara Chandrasekharappa, National Institutes of Health.
Location: August 28, 2018, 2:00pm, Room 1300, Harris Building…
Enriched miRNA-mRNA pair pathways in hepatocellular carcinoma for patients of different racial backgrounds
Presenter: Amber Alley
Mentor: Dr. Habtom Ressom, Department of Oncology, Georgetown University.
Location: August 28, 2018, 2:00pm, Room 1300, Harris Building…
Designing and Implementing a RedCap Database for Clinical Breast Cancer Data
Presenter: Latifat Braimah
Mentor: Dr. Deborah Berry, Histopathology and Tissue Shared Resource, Georgetown University.
Location: August 29, 2017, 2:30pm, Room 341, Basic Science…
A Comprehensive Database for Compound Property Prediction Using Deep Learning Technique
Bioinformatics internship presentation by Ying Dong.
Mentor: Dr. Xiaohua Zhang, Lawrence Livermore National Laboratory.
August 29, 2017, 2:30pm, Room 341, Basic Science…
Metatranscriptomic annotation of oral microbial population from tissues with root caries
Bioinformatics internship presentation by Luis G. Rivera-García.
Mentor: Dr. Matthew D. McCoy, Innovation Center for Biomedical Informatics, Department of Oncology, Georgetown University.
August 29, 2017, 2:30pm, Room 341, Basic Science…
Visualization and automated reporting of proteomic consistency metrics
Bioinformatics internship presentation by Yi Bai.
Mentor: Dr. Simina Boca, Innovation Center for Biomedical Informatics, Department of Oncology and Department of Biostatistics, Bioinformatics and Biomathematics, Georgetown University.
August 29, 2017, 2:30pm, Room 341, Basic Science…
ESTABLISHING GLYCAN ONTOLOGY – ALGORITHMS FOR GLYCAN COMPARISON AND VISUALIZATION
Bioinformatics internship presentation by Avery Wang.
Mentor: Dr. Nathan Edwards, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University.
August 29, 2017, 2:30pm, Room 341, Basic Science…
Data-Mining of Oncogenomic Datasets
Bioinformatics internship presentation by Anna Abaimova.
Mentor: Dr. Bassem Haddad, Department of Oncology, Georgetown University.
August 29, 2017, 2:30pm, Room 341, Basic Science…
Bioinformatics Analysis of Tumor Infiltrating Immune Cell Subsets in Hepatocellular Carcinoma
Bioinformatics internship presentation by Ushna Ahmad.
Mentor: Dr. Yuriy Gusev, Innovation Center for Biomedical Informatics, Department of Oncology, Georgetown University.
August 29, 2017, 2:30pm, Room 341, Basic Science…
Design, extraction, and dashboard creation of an expandable recruitment data mart for diabetes clinical trials.
Bioinformatics internship presentation by Ariel Roane.
Mentor: Dr. Ian M. Brooks, MedStar Health Research Institute.
August 29, 2017, 2:30pm, Room 341, Basic Science…
Development of OPRMA, an online tool to analyze RNA – protein interactions and RNA modifications
Bioinformatics internship presentation by Zhenzhi Li.
Mentor: Dr. Shaojun Tang, Innovation Center for Biomedical Informatics, Georgetown University.
August 29, 2017, 2:30pm, Room 341, Basic Science…
Development of a python program for VCF file analysis in a metastatic melanoma study
Bioinformatics internship presentation by Muzi Li.
Mentor: Dr. Shaojun Tang, Innovation Center for Biomedical Informatics, Georgetown University.
May 12th, 2017, 2:00pm, Room 1202, Harris Building.…
Curation Workflow Development for SkateBase: A Resource for Little Skate Genome Annotation
Bioinformatics internship presentation by Sara Robinson.
Mentor: Dr. Karen Ross, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University.
May 12th, 2017, 2:00pm, Room 1202, Harris Building…
Replacing Pedigree Error Analysis, Using Phased Linked Reads to Identify False Genotypes
Bioinformatics internship presentation by Zhezhen Wang.
Mentors: Dr. Justin Zook, NIST and Dr. Nathan Edwards, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University.
August 30th, 2016, 2:00pm, Room 1300, Harris Building.…
ChIP-Seq data analysis pipeline development in a breast cancer study
Bioinformatics internship presentation by Nan Hu.
Mentors: Dr. Robert Clarke and Lu Jin, Department of Oncology and Lombardi Comprehensive Cancer Center, Georgetown University.
August 30th, 2016, 2:00pm, Room 1300, Harris Building.…
Approaches for Annotation of Endogenous Retrovirus Elements
Bioinformatics internship presentation by Olumuyiwa Daramola.
Mentor: Dr. Arifa Khan, CBER, U.S. Food and Drug Administration.
August 30th, 2016, 2:00pm, Room 1300, Harris Building.…
Data Migration from the Legacy Familial Cancer Registry (FCR) Database to the New REDCap Database System
Bioinformatics internship presentation by Mustafa Albahrani.
Mentor: Erin Carney, Nontherapeutic Subject Registry, Lombardi Comprehensive Cancer Center, Georgetown University.
August 30th, 2016, 2:00pm, Room 1300, Harris Building.…
Application of RNA-sequencing for characterization of hepatocellular carcinoma
Bioinformatics internship presentation by Maedeh Mohammadnetaj.
Mentor: Dr. Habtom Ressom, Department of Oncology, Lombardi Comprehensive Cancer Center, Georgetown University.
August 30th, 2016, 2:00pm, Room 1300, Harris Building.…
Optimization of a SWATH data acquisition method on a Q-Exactive MS for label-free, global proteomics
Bioinformatics internship presentation by Dave Mitchel.
Mentors: Drs. Brian L. Hood, Thomas P. Conrads, and Nicholas W. Bateman; DOD Gynecologic Cancer Center of Excellence, Women’s Health Integrated Research Center and Inova Schar Cancer Institute, Inova Center for Personalized Health.
August 30th, 2016, 2:00pm, Room 1300, Harris Building.…
Identification and characterization of FANCA and FANCD2 deletion variants from ten Fanconi Anemia patients and a R shiny application to display curated data from FANCD1/FANCD2 – PARP inhibitors research articles
Bioinformatics internship presentation by Apoorva Kulkarni.
Mentor: Dr. Settara Chandrasekharappa, NHGRI/NIH.
August 30th, 2016, 2:00pm, Room 1300, Harris Building.…
Rare Variants Association Study for inherited retinal diseases via Exome Sequencing
Bioinformatics internship presentation by Jiayao Wang.
Mentor: Rinki Ratnapryia, Ph.D. NIH/NEI Neurobiology Neurodegeneration & Repair Laboratory.
August 30th, 2016, 2:00pm, Room 1300, Harris Building.…
Development of a Python Program for De-identification of Breast Cancer Patient Data
Bioinformatics internship presentation by Abrar Albahrani.
Mentors: Dr. Deborah Berry and Krysta Chaldekas, Histopathology & Tissue Shared Resource, Lombardi Comprehensive Cancer Center, Georgetown University.
August 30th, 2016, 2:00pm, Room 1300, Harris Building.…
Searching For Unique Relationships Between Human Genetic Diseases Based Upon Disease-Associated SNPs in Protein Features
Bioinformatics internship presentation by Seth Commichaux.
Mentor: Dr. Karen Ross, Biochemistry and Molecular & Cellular Biology, Georgetown University.
August 26th, 2016, 2:00pm, Room 1202, Harris Building.…
Manual Review of Text-Mining Results for Accuracy and Incidences of PTM Cross-Talk
Bioinformatics internship presentation by Megan Yung.
Mentor: Dr. Karen Ross, Biochemistry and Molecular & Cellular Biology, Georgetown University.
August 26th, 2016, 2:00pm, Room 1202, Harris Building.…
Integrating Clinical Breast Cancer Data into a Longitudinal REDCap Project Database
Bioinformatics internship presentation by Gaelle Sop-Kamga.
Mentors: Dr. Deborah Berry and Krysta Chaldekas, Histopathology & Tissue Shared Resource, Lombardi Comprehensive Cancer Center, Georgetown University.
July 25th, 2016, 1:00pm, Room 1202, Harris Building.…
Variant analysis of LY6 genes in Breast and Ovarian cancer
Bioinformatics internship presentation by Midrar Al Hossiny. Mentors: Dr. Geeta Upadhyay, Lombardi Comprehensive Cancer Center and Innovation Center for Biomedical Informatics, Department of Oncology, Georgetown University; and Dr. Yuriy Gusev, Innovation Center for Biomedical Informatics, Department of Oncology, Georgetown University. May 13th, 2016, 10:00am, Room 1300, Harris Building.…
Indirect Observation of Single Nucleotide Variants in Proteomics Data
Bioinformatics internship presentation by Bixuan Wang.
Mentor: Dr. Nathan Edwards, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University.
May 13th, 2016, 10:00am, Room 1300, Harris Building.…
Metabolic Biomarkers for Type I Diabetes and Cardiovascular Disease Risk in Adolescents
Bioinformatics internship presentation by Alexander Wong.
Mentor: Dr. Simina Boca, Innovation Center for Biomedical Informatics, Department of Oncology, Georgetown University.
May 13th, 2016, 10:00am, Room 1300, Harris Building.…
Graphical User Interface for Analyzing Optomotor Response in Mice
Bioinformatics internship presentation by Walid Chatila.
Mentor: Dr. Tudor C. Badea, NEI (NIH).
May 13th, 2016, 10:00am, Room 1300, Harris Building.…
OpID: Opportunistic Infections mobile application for immunocompromised patients
Bioinformatics internship presentation by Mohammad Shahbaz Khan.
Mentor: Dr. Krystyna Helena Szymczyk, Bioinformatics Scientist, NIAID (NIH).
April 29th, 2016, 2:00pm, Room 1202, Harris Building.…
Small Molecule Metabolites as Predictive Biomarkers for Cardiovascular Risk of Exposure to 16O Radiation
Bioinformatics internship presentation by Khyati Mehta.
Mentor: Dr. Amrita Cheema, Department of Oncology and Biochemistry and Molecular & Cellular Biology; Co-Director of Proteomics and Metabolomics Shared Resource, Georgetown University Medical Center.
December 14th, 2016, 2:00pm, Room 341, Basic Science.…
Informatics View of Inflammatory Bowel Disease
Bioinformatics internship presentation by Christopher Greco.
Mentor: Dr. Sona Vasudevan, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University.
December 14th, 2016, 2:00pm, Room 341, Basic Science.…
The relationship between autism spectrum disorder and calcium signaling
Bioinformatics internship presentation by Leena Nezamuldeen.
Mentor: Dr. Karen Ross, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University.
December 14th, 2016, 2:00pm, Room 341, Basic Science.…
Replacing Pedigree Error Analysis, Using Phased Linked Reads to Identify False Genotypes
Bioinformatics internship presentation by Zhezhen Wang.
Mentors: Dr. Justin Zook, NIST and Dr. Nathan Edwards, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University.
August 30th, 2016, 2:00pm, Room 1300, Harris Building.…
ChIP-Seq data analysis pipeline development in a breast cancer study
Bioinformatics internship presentation by Nan Hu.
Mentors: Dr. Robert Clarke and Lu Jin, Department of Oncology and Lombardi Comprehensive Cancer Center, Georgetown University.
August 30th, 2016, 2:00pm, Room 1300, Harris Building.…
Approaches for Annotation of Endogenous Retrovirus Elements
Bioinformatics internship presentation by Olumuyiwa Daramola.
Mentor: Dr. Arifa Khan, CBER, U.S. Food and Drug Administration.
August 30th, 2016, 2:00pm, Room 1300, Harris Building.…
Data Migration from the Legacy Familial Cancer Registry (FCR) Database to the New REDCap Database System
Bioinformatics internship presentation by Mustafa Albahrani.
Mentor: Erin Carney, Nontherapeutic Subject Registry, Lombardi Comprehensive Cancer Center, Georgetown University.
August 30th, 2016, 2:00pm, Room 1300, Harris Building.…
Application of RNA-sequencing for characterization of hepatocellular carcinoma
Bioinformatics internship presentation by Maedeh Mohammadnetaj.
Mentor: Dr. Habtom Ressom, Department of Oncology, Lombardi Comprehensive Cancer Center, Georgetown University.
August 30th, 2016, 2:00pm, Room 1300, Harris Building.…
Optimization of a SWATH data acquisition method on a Q-Exactive MS for label-free, global proteomics
Bioinformatics internship presentation by Dave Mitchel.
Mentors: Drs. Brian L. Hood, Thomas P. Conrads, and Nicholas W. Bateman; DOD Gynecologic Cancer Center of Excellence, Women’s Health Integrated Research Center and Inova Schar Cancer Institute, Inova Center for Personalized Health.
August 30th, 2016, 2:00pm, Room 1300, Harris Building.…
Identification and characterization of FANCA and FANCD2 deletion variants from ten Fanconi Anemia patients and a R shiny application to display curated data from FANCD1/FANCD2 – PARP inhibitors research articles
Bioinformatics internship presentation by Apoorva Kulkarni.
Mentor: Dr. Settara Chandrasekharappa, NHGRI/NIH.
August 30th, 2016, 2:00pm, Room 1300, Harris Building.…
Rare Variants Association Study for inherited retinal diseases via Exome Sequencing
Bioinformatics internship presentation by Jiayao Wang.
Mentor: Rinki Ratnapryia, Ph.D. NIH/NEI Neurobiology Neurodegeneration & Repair Laboratory.
August 30th, 2016, 2:00pm, Room 1300, Harris Building.…
Development of a Python Program for De-identification of Breast Cancer Patient Data
Bioinformatics internship presentation by Abrar Albahrani.
Mentors: Dr. Deborah Berry and Krysta Chaldekas, Histopathology & Tissue Shared Resource, Lombardi Comprehensive Cancer Center, Georgetown University.
August 30th, 2016, 2:00pm, Room 1300, Harris Building.…
Searching For Unique Relationships Between Human Genetic Diseases Based Upon Disease-Associated SNPs in Protein Features
Bioinformatics internship presentation by Seth Commichaux.
Mentor: Dr. Karen Ross, Biochemistry and Molecular & Cellular Biology, Georgetown University.
August 26th, 2016, 2:00pm, Room 1202, Harris Building.…
Manual Review of Text-Mining Results for Accuracy and Incidences of PTM Cross-Talk
Bioinformatics internship presentation by Megan Yung.
Mentor: Dr. Karen Ross, Biochemistry and Molecular & Cellular Biology, Georgetown University.
August 26th, 2016, 2:00pm, Room 1202, Harris Building.…
Integrating Clinical Breast Cancer Data into a Longitudinal REDCap Project Database
Bioinformatics internship presentation by Gaelle Sop-Kamga.
Mentors: Dr. Deborah Berry and Krysta Chaldekas, Histopathology & Tissue Shared Resource, Lombardi Comprehensive Cancer Center, Georgetown University.
July 25th, 2016, 1:00pm, Room 1202, Harris Building.…
Variant analysis of LY6 genes in Breast and Ovarian cancer
Bioinformatics internship presentation by Midrar Al Hossiny. Mentors: Dr. Geeta Upadhyay, Lombardi Comprehensive Cancer Center and Innovation Center for Biomedical Informatics, Department of Oncology, Georgetown University; and Dr. Yuriy Gusev, Innovation Center for Biomedical Informatics, Department of Oncology, Georgetown University. May 13th, 2016, 10:00am, Room 1300, Harris Building.…
Indirect Observation of Single Nucleotide Variants in Proteomics Data
Bioinformatics internship presentation by Bixuan Wang.
Mentor: Dr. Nathan Edwards, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University.
May 13th, 2016, 10:00am, Room 1300, Harris Building.…
Metabolic Biomarkers for Type I Diabetes and Cardiovascular Disease Risk in Adolescents
Bioinformatics internship presentation by Alexander Wong.
Mentor: Dr. Simina Boca, Innovation Center for Biomedical Informatics, Department of Oncology, Georgetown University.
May 13th, 2016, 10:00am, Room 1300, Harris Building.…
Graphical User Interface for Analyzing Optomotor Response in Mice
Bioinformatics internship presentation by Walid Chatila.
Mentor: Dr. Tudor C. Badea, NEI (NIH).
May 13th, 2016, 10:00am, Room 1300, Harris Building.…
OpID: Opportunistic Infections mobile application for immunocompromised patients
Bioinformatics internship presentation by Mohammad Shahbaz Khan.
Mentor: Dr. Krystyna Helena Szymczyk, Bioinformatics Scientist, NIAID (NIH).
April 29th, 2016, 2:00pm, Room 1202, Harris Building.…
Faster enumeration of amino-acid tags for peptide tandem mass-spectra
Bioinformatics internship presentation by Gabriele Dani.
Mentor: Dr. Nathan Edwards, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University.
December 18th, 2015, 2:00pm, Room 1300, Harris Building.…
Bioinformatics-aided Strategies for Antibody Engineering
Bioinformatics internship presentation by Angelica Ochoa.
Mentors: Dr. Lu Shan & Dr. Melissa Damschroder, Antibody Discovery and Protein Engineering, MedImmune, LLC.
December 18th, 2015, 2:00pm, Room 1300, Harris Building.…
Analyze the role of HAI-2 N-Glycosylation in matriptase activation mechanism
Bioinformatics internship presentation by Ru Jia.
Mentor: Dr. Chen-Yong Lin, Lombardi Comprehensive Cancer Center, Georgetown University.
December 4th, 2015, 2:00pm-2:30pm, Room 1202, Harris Building.…
RNA2DNAlign: A TOOL TO IDENTIFY SNVs IMPLICATED IN REGULATORY MECHANISMS THROUGH ALIGNMENT OF NORMAL AND TUMOR RNA AND DNA
Bioinformatics internship presentation by Nawaf Alomran.
Mentor: Dr. Anelia Horvath, Department of Biochemistry and Molecular Medicine, George Washington University.
September 1st, 3:40-4:00pm, Room 1300, Harris Building.…
In silico phosphoproteomic study: discrepancy of DCA effectiveness as a possible pyruvate dehydrogenase kinase inhibitor in the treatment of breast and ovarian cancers
Bioinformatics internship presentation by Abdelrahman El-Sayed.
Mentor: Dr. Karen Ross, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University.
September 1st, 3:20-3:40pm, Room 1300, Harris Building.…
Gene set enrichment with correlation of gene expression and its translated protein abundance in colorectal cancer study
Bioinformatics internship presentation by Xu Liu.
Mentor: Dr. Nathan Edwards, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University.
September 1st, 3:00-3:20pm, Room 1300, Harris Building.…
Peptide-based Clustering for Determination of Colorectal Cancer Subtypes
Bioinformatics internship presentation by Amina Jackson.
Mentor: Dr. Nathan Edwards, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University.
September 1st, 4:00-4:20pm, Room 1300, Harris Building.…
Comparison of Tools for the Intensity-Based Quantification of Proteomic Data
Zack Heins (Mentor: Dr. Renee Olano, Bioinformatics Specialist, National Institute of Allergy and Infectious Diseases, NIH) September 1st, 2015, 2:40-3:00pm, Room 1300, Harris Building Mass…
Gulf War Illness (GWI) Metabolomic Analysis
Bioinformatics internship presentation by Kelvin Carrasquillo-Carrión.
Mentor: Dr. Simina Boca, Innovation Center for Biomedical Informatics, Department of Oncology, Georgetown University.
September 1st, 2:20-2:40pm, Room 1300, Harris Building.…
Systems Biology analysis of Gender specific Molecular Biomarkers in Human Cancer, based on GDOC-Plus study collection
Bioinformatics internship presentation by Payal Banerjee.
Mentor: Dr. Yuriy Gusev, Innovation Center for Biomedical Informatics, Department of Oncology, Georgetown University.
September 1st, 2:00-2:20pm, Room 1300, Harris Building.…
Phylomics: A new approach to understand pancreatic cancer development at the molecular level
Mukta Joshi (Mentor: Dr. Sona Vasudevan, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University) August 11th, 2015, 2:00pm-2:30pm, Room 239, Basic Science…
Identification of colorectal cancer subtypes
Bioinformatics internship presentation by Alhussin Binsaleh.
Mentor: Dr. Nathan Edwards, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University.
May 5th, 2:00pm-2:30pm, Room 1202, Harris Building.…
A Web-based User Interface For Microorganism Identification
Bioinformatics internship presentation by Mingda Jin.
Mentor: Dr. Nathan Edwards, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University.
April 24th, 2:00pm-2:30pm, Room 1202, Harris Building.…
Is Clinical Proteomics Data Personally Identifiable Information?
Bioinformatics internship presentation by Safiyah Murray.
Mentor: Dr. Nathan Edwards, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University.
December 5th, 1:00pm-1:30pm, Room 1202, Harris Building.…
A sequencing approach to refine the PEAR1 locus in platelet aggregation
Prabhakaran Gangadharan (Mentor: Dr. Rasika Mathias, Division of Allergy and Clinical Immunology, Johns Hopkins University School of Medicine) August 26th, 3:00pm-3:20pm Room 1300, Harris…
Molecular Classification of Vaccine Adverse Events
Bioinformatics internship presentations by Zebasil Teshale.
Mentor: Dr. Peter McGarvey, Protein Information Resource, Georgetown University.
August 26th, 2:40pm-3:00pm Room 1300, Harris Building.…
Regulation of proprotein convertase activity by substrate glycosylation and related genomic variants
Bioinformatics internship presentation by Laila Al-washahi.
Mentor: Dr. Rado Goldman, Department of Oncology, Georgetown University.
August 26th, 2pm-2:20pm Room 1300, Harris Building.…
Is NoSQL for Bioinformatics?
Bioinformatics internship presentation by Shiyang Yuan.
Mentor: Dr. Sheng-Chih Chen, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University.
August 26th, 2pm-4:30pm Room 1300, Harris Building.…
Propagation of glycopeptide identifications using spectra similarity networks
Bioinformatics internship presentation by Junyuan Zheng.
Mentor: Dr. Nathan Edwards, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University.
August 26th, 2:20pm-2:40pm Room 1300, Harris Building.…
Building a Relational Database for the Aedes albopictus Transcriptome and Application to Identification of microRNA Binding Sites
Bioinformatics internship presentation by Bridget Tripp.
Mentor: Dr. Peter Armbruster, Department of Biology, Georgetown University.
August 26th, 2pm-4:30pm Room 1300, Harris Building.…
Evaluating pathogenic variants of Fanconi anemia
Bioinformatics internship presentation by Subhiksha Nandakumar.
Mentor: Dr. Settara Chandrasekharappa, National Institutes of Health.
August 26th, 3:20pm-3:40pm Room 1300, Harris Building.…
Detection of Annotation Errors: Sequence or Structural Similarity – Which One to Rely On?
Bioinformatics internship presentation by Kholud Almarzoki.
Mentor: Dr. C.R. Vinayaka, Protein Information Resource, Georgetown University.
May 9th, 10:30am, Room 1202, Harris Building.…
