Exploiting RAS dimers for ligand discovery
Dillon Chu Mentor : Dr . Trent Balius , RAS Com Chem Team , NCI RAS Initiative , Frederick National Lab for Cancer Research . Date / Time : August 24 , 2021 at 3 : 4…
Internship
Students will participate in an enriching 16-week internship with bioinformatics experts at Georgetown University or bioinformatics, biomedical and biotechnology institutions in the Washington DC area, including:
- National Institute of Health (NIH), such as NCI, CBIIT, & NCBI
- The J Craig Venter Institute (formerly TIGR)
- Children’s National Medical Center
- Center for Advanced Research in Biotechnology (CARB)
- National Institutes of Standards and Technology (NIST)
- Local biotechnology companies
Documents & Forms
Internship Proposal Form
Internship Proposal FormInternship Mentor Evaluation Form
Mentor Evaluation FormInternship Presentations
Summer 2021
Developing a reproducible, adaptable data analysis pipeline for Nanopore RNA-seq data with Snakemake, a Python-based workflow engine
Vincent Miller Mentor : Dr . Vishal Koparde , Frederick National Laboratory for Cancer Research . Date / Time : August 24 , 2021 at 3 : 20pm Abstract : Over the…
A DISCUSSION on SOFTWARE for CRISPR DATA ANALYSIS: A Comparison between CRISPRPIC and CRISPResso2
Jemima Kamran Mentor : Dr . Desiree Tillo , Frederick National Laboratory for Cancer Research . Date / Time : August 24 , 2021 at 3 : 00pm Abstract : Cultured re…
What types of disease dynamics result in elevated rates of adaptation?
Sarah Jo McGeady Mentor : Dr . Lawrence Uricchio , Department of Biology , Tufts University . Date / Time : August 24 , 2021 at 2 : 40pm Abstract : Recent literat…
Investigating Platelet Reactivity in Diabetic Patients of the Framingham Heart Study
Daniall Masood Mentor : Dr . Melissa Chan , Senior Research Fellow at the Framingham Heart Study at The National Institutes of Health . Date / Time : August 24…
Application of SNP2SIM to Venetoclax Resistant Variants in BCL2
Brooke Szczesny Mentor : Dr . Matthew & nbsp ; McCoy , Innovation Center for Biomedical Informatics ( ICBI ), Department of Oncology , Georgetown University Medical…
Using simulations of protein dynamics to understand BCL2 binding with Venetoclax
Wanyue Zou Mentor : Dr . Mathew McCoy , Innovation Center for Biomedical Informatics ( ICBI ) and Department of Oncology , Georgetown University Medical Center…
Development of Original BCL2-Venetoclax Bound Structures for Use in Molecular Dynamic Simulations
Helen Ashdown Mentor : Dr . Matthew & nbsp ; McCoy , Innovation Center for Biomedical Informatics ( ICBI ), Department of Oncology , Georgetown University Medical Ce…
A view to a kill: System-level analysis of metabolism in an algicidal bacterium
Genevieve Parkey Mentors : Dr . Ali Navid and Dr . Helena Van Tol , Biochemical and Biophysical Systems Group , Lawrence Livermore National Laboratory . Date…
Fall 2020
Analysis of drug affected clusters in a multi-PTM correlation network
Churan Huang Mentor : Dr . Karen Ross , Department of Biochemistry and Molecular & amp ; Cellular Biology , Georgetown University Medical Center . Date / Time : D…
Summer 2020
Shortest-Path Network Analysis of PTM Site Changes in Non-Small Cell Lung Cancer
Yu Lin Mentor : Dr . Karen Ross , Department of Biochemistry and Molecular & amp ; Cellular Biology , Georgetown University Medical Center . Date / Time : August…
Identifying Prospective Markers for Thyroid Status Using a Differential Gene Expression Analysis Workflow
Peter Chang Mentor : Drs . Karen Ross and Mark Danielsen , Department of Biochemistry and Molecular & amp ; Cellular Biology , Georgetown University Medical Cente…
Extracting Transitions from GPTwiki Glycopeptide Database
Yujian Long Mentor : Dr . Nathan Edwards , Department of Biochemistry and Molecular & amp ; Cellular Biology , Georgetown University Medical Center . Date / Time…
Glycan Structure Extraction from Scientific Literature
Nhat Duong Mentor : Dr . Nathan Edwards , Department of Biochemistry and Molecular & amp ; Cellular Biology , Georgetown University Medical Center . Date / Time…
Transcription Factor Variant Mapping
Jiayu Fu Mentor : Dr . Matthew McCoy , Innovation Center for Biomedical Informatics , Department of Oncology and Department of Biostatistics , Bioinformatics and…
Enrichment of Variant Information for the Variant Standardization and Annotation Pipeline
Christina Coppola Mentor : Dr . Jennifer Lee , Bioinformatics Applications Development Center ( BADC ) within the National Cancer Institute ’ s Frederick Nationa…
Predicting Resistance to Bcl2 antagonists using an In-Silico Functional Assay
Shannon Cosgrove Mentor : Dr . Matthew McCoy , Innovation Center for Biomedical Informatics , Department of Oncology and Department of Biostatistics , Bioinforma…
Analysis of PySam Versioning Changes
Patrick Chen Mentor : Dr . Nathan Edwards , Department of Biochemistry and Molecular & amp ; Cellular Biology , Georgetown University Medical Center . Date / Tim…
Orthlog Inference using Multiple-Sequence Alignment
Zekai Ding Mentor : Dr . Nathan Edwards , Department of Biochemistry and Molecular & amp ; Cellular Biology , Georgetown University Medical Center . Date / Time…
Ontological Enumeration of SARS-CoV-2 Proteoforms
Ying Cheng Mentor : Dr . Darren Natale , Protein Information Resource , Georgetown University Medical Center . Date / Time : August 25 , 2020 at 5pm Abstract…
Analysis of metabolomics data from radiation in nonhuman primate serum
Samantha Shen Mentors : Dr . Amrita Cheema , Department of Oncology and Biochemistry and Molecular & amp ; Cellular Biology , Metabolomics Shared Resource , and Dr…
Metagenomic Analysis of the Astronaut Microbiome
Zelaikha Yosufzai Mentors : Drs . Crystal Jaing and Michael Morrison , Lawrence Livermore National Laboratory Genomics Group . Date / Time : August 25 , 2020 at…
Electrophysiological Changes in Cortical-Striatal Synaptic Function in Mice with Ephrin-A5 Gene Deletions
Mark Gabriel Mentor : Dr . Lawrence Kromer , Department of Neuroscience , Georgetown University . Date / Time : June 26 , 2020 at 3pm Abstract : Understandings…
Summer 2019
Using multiplex imaging to understand spatial heterogeneity in breast cancer
Yingqi Li Mentors : Dr . Simina Boca , Innovation Center for Biomedical Informatics , Department of Oncology and Department of Biostatistics , Bioinformati…
Network Analysis to Identify Key Proteins and Pathways Targeted During Herpesvirus Infection
Zachary S . Wallace Mentor : Dr . Richard H . Scheuermann , Department of Bioinformatics , J . Craig Venter Institute Date / Time : August 27 , 2019 at 2pm…
Epigenetic control of CD4 expression in African green monkeys
Sanjana Shah Mentor : Dr . Jason Brenchley , National Institute of Allergy and Infectious Diseases , National Institutes of Health Date / Time : August 27…
Increasing the diagnostic yield of an autoinflammatory disease cohort by copy number variant analysis
Brynja Matth í asard ó ttir Mentor : Dr . Ivona Aksentijevich , National Human Genome Research Institute , National Institutes of Health Date / Time : Augus…
Comparison of Phylogenetic and Phenetic Clustering
Lorena Sandoval Mentor : Dr . Terry Hyslop , Department of Biostatistics and Bioinformatics , Duke University Date / Time : August 27 , 2019 at 2pm Locati…
Molecular profiling breast cancer recurrence: a meta-analysis
Shruti Gautam Mentors : Dr . Robert Clarke , Department of Oncology , Georgetown University ; Lu Jin , Department of Oncology , Georgetown University Date…
Curation of clinical trials for Duchenne Muscular Dystrophy (DMD)
Bin Hai Mentor : Dr . Simina Boca , Innovation Center for Biomedical Informatics , Department of Oncology and & nbsp ; Department of Biostatistics , Bioinforma…
Predictive modeling of brain cancer outcomes based on molecular profiling data
Rebecca Fuchs Mentor : Dr . Yuriy Gusev , Innovation Center for Biomedical Informatics , Department of Oncology , Georgetown University Date / Time : August…
Improved retention-time estimation for glycopeptide extracted-ion chromatograms
Yixin Wu Mentor : Dr . Nathan Edwards , Department of Biochemistry and Molecular & amp ; Cellular Biology , Georgetown University Date / Time : August 27…
RNA-Editing in Thyroid Cancer
Yonghyun Kwon Mentor : Dr . Anelia Horvath , Department of Biochemistry & amp ; Molecular Medicine , George Washington University Date / Time : May 13 , 2019 at…
Spring 2019
Emergence of Known and Novel Healthcare-Associated Pathogens in the Gut Microbiome after Antibiotic Treatment
Lacy Walker Mentor : Dr . Zhihua Li , The Food and Drug Administration ( CDER / OMPT / CDER / OTS / OCP / DARS ) Date / Time : May 13 , 2019 at 1 : 30pm Location : Room…
Indeed 2.0
Kian Ghaffari Mentor : Dr . Habtom Ressom , Department of Oncology , Georgetown University Medical Center Date / Time : May 13 , 2019 at 1 : 30pm Location…
Summer 2018
Designing a Framework for a MS/MS Library to be Utilized for Compound Identification
Presenter: Meth Jayatilake
Mentor: Dr. Amrita Cheema, Department of Oncology and Biochemistry and Molecular & Cellular Biology; Director of Metabolomics Shared Resource, Georgetown University Medical Center.
Location: August 28, 2018, 2:00pm, Room 1300, Harris Building
Semantic Glycan Data Modelling using Semantic MediaWiki
Presenter: Xuewei Chen.
Mentor: Dr. Nathan Edwards, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University.
Location: August 28, 2018, 2:00pm, Room 1300, Harris Building
Glycan structure parsing, alignment, and visualization
Presenter: Wenjin Zhang
Mentor: Dr. Nathan Edwards, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University.
Location: August 28, 2018, 2:00pm, Room 1300, Harris Building
R Shiny App for Comparing Quantified RNA Expression Datasets
Presenter: Qingyuan Ma
Mentor: Dr. Matthew McCoy, Innovation Center for Biomedical Informatics, Department of Oncology and Department of Biostatistics, Bioinformatics and Biomathematics, Georgetown University.
Location: August 28, 2018, 2:00pm, Room 1300, Harris Building
Optimization and Complementing of Proteomic Consistency Metrics Reporting Pipeline
Presenter: Jiahao Huang
Mentor: Dr. Shaojun Tang, Innovation Center for Biomedical Informatics, Georgetown University.
Location: August 28, 2018, 2:00pm, Room 1300, Harris Building
Bioinformatic software development for analysis of admixed populations
Presenter: Guangchuan Ji
Mentor: Dr. Simina Boca, Innovation Center for Biomedical Informatics, Department of Oncology and Department of Biostatistics, Bioinformatics and Biomathematics, Georgetown University.
Location: August 28, 2018, 2:00pm, Room 1300, Harris Building
Targeted RNASeq Analysis of Fanconi Anemia Patients
Presenter: Vibhish Raghuraman.
Mentor: Dr. Settara Chandrasekharappa, National Institutes of Health.
Location: August 28, 2018, 2:00pm, Room 1300, Harris Building
Enriched miRNA-mRNA pair pathways in hepatocellular carcinoma for patients of different racial backgrounds
Presenter: Amber Alley
Mentor: Dr. Habtom Ressom, Department of Oncology, Georgetown University.
Location: August 28, 2018, 2:00pm, Room 1300, Harris Building
Designing and Implementing a RedCap Database for Clinical Breast Cancer Data
Presenter: Latifat Braimah
Mentor: Dr. Deborah Berry, Histopathology and Tissue Shared Resource, Georgetown University.
Location: August 29, 2017, 2:30pm, Room 341, Basic Science
Summer 2017
A Comprehensive Database for Compound Property Prediction Using Deep Learning Technique
Bioinformatics internship presentation by Ying Dong.
Mentor: Dr. Xiaohua Zhang, Lawrence Livermore National Laboratory.
August 29, 2017, 2:30pm, Room 341, Basic Science
Metatranscriptomic annotation of oral microbial population from tissues with root caries
Bioinformatics internship presentation by Luis G. Rivera-García.
Mentor: Dr. Matthew D. McCoy, Innovation Center for Biomedical Informatics, Department of Oncology, Georgetown University.
August 29, 2017, 2:30pm, Room 341, Basic Science
Visualization and automated reporting of proteomic consistency metrics
Bioinformatics internship presentation by Yi Bai.
Mentor: Dr. Simina Boca, Innovation Center for Biomedical Informatics, Department of Oncology and Department of Biostatistics, Bioinformatics and Biomathematics, Georgetown University.
August 29, 2017, 2:30pm, Room 341, Basic Science
ESTABLISHING GLYCAN ONTOLOGY – ALGORITHMS FOR GLYCAN COMPARISON AND VISUALIZATION
Bioinformatics internship presentation by Avery Wang.
Mentor: Dr. Nathan Edwards, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University.
August 29, 2017, 2:30pm, Room 341, Basic Science
Data-Mining of Oncogenomic Datasets
Bioinformatics internship presentation by Anna Abaimova.
Mentor: Dr. Bassem Haddad, Department of Oncology, Georgetown University.
August 29, 2017, 2:30pm, Room 341, Basic Science
Bioinformatics Analysis of Tumor Infiltrating Immune Cell Subsets in Hepatocellular Carcinoma
Bioinformatics internship presentation by Ushna Ahmad.
Mentor: Dr. Yuriy Gusev, Innovation Center for Biomedical Informatics, Department of Oncology, Georgetown University.
August 29, 2017, 2:30pm, Room 341, Basic Science
Design, extraction, and dashboard creation of an expandable recruitment data mart for diabetes clinical trials.
Bioinformatics internship presentation by Ariel Roane.
Mentor: Dr. Ian M. Brooks, MedStar Health Research Institute.
August 29, 2017, 2:30pm, Room 341, Basic Science
Development of OPRMA, an online tool to analyze RNA – protein interactions and RNA modifications
Bioinformatics internship presentation by Zhenzhi Li.
Mentor: Dr. Shaojun Tang, Innovation Center for Biomedical Informatics, Georgetown University.
August 29, 2017, 2:30pm, Room 341, Basic Science
Spring 2017
Development of a python program for VCF file analysis in a metastatic melanoma study
Bioinformatics internship presentation by Muzi Li.
Mentor: Dr. Shaojun Tang, Innovation Center for Biomedical Informatics, Georgetown University.
May 12th, 2017, 2:00pm, Room 1202, Harris Building.
Curation Workflow Development for SkateBase: A Resource for Little Skate Genome Annotation
Bioinformatics internship presentation by Sara Robinson.
Mentor: Dr. Karen Ross, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University.
May 12th, 2017, 2:00pm, Room 1202, Harris Building
Summer 2016
Replacing Pedigree Error Analysis, Using Phased Linked Reads to Identify False Genotypes
Bioinformatics internship presentation by Zhezhen Wang.
Mentors: Dr. Justin Zook, NIST and Dr. Nathan Edwards, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University.
August 30th, 2016, 2:00pm, Room 1300, Harris Building.
ChIP-Seq data analysis pipeline development in a breast cancer study
Bioinformatics internship presentation by Nan Hu.
Mentors: Dr. Robert Clarke and Lu Jin, Department of Oncology and Lombardi Comprehensive Cancer Center, Georgetown University.
August 30th, 2016, 2:00pm, Room 1300, Harris Building.
Approaches for Annotation of Endogenous Retrovirus Elements
Bioinformatics internship presentation by Olumuyiwa Daramola.
Mentor: Dr. Arifa Khan, CBER, U.S. Food and Drug Administration.
August 30th, 2016, 2:00pm, Room 1300, Harris Building.
Data Migration from the Legacy Familial Cancer Registry (FCR) Database to the New REDCap Database System
Bioinformatics internship presentation by Mustafa Albahrani.
Mentor: Erin Carney, Nontherapeutic Subject Registry, Lombardi Comprehensive Cancer Center, Georgetown University.
August 30th, 2016, 2:00pm, Room 1300, Harris Building.
Application of RNA-sequencing for characterization of hepatocellular carcinoma
Bioinformatics internship presentation by Maedeh Mohammadnetaj.
Mentor: Dr. Habtom Ressom, Department of Oncology, Lombardi Comprehensive Cancer Center, Georgetown University.
August 30th, 2016, 2:00pm, Room 1300, Harris Building.
Optimization of a SWATH data acquisition method on a Q-Exactive MS for label-free, global proteomics
Bioinformatics internship presentation by Dave Mitchel.
Mentors: Drs. Brian L. Hood, Thomas P. Conrads, and Nicholas W. Bateman; DOD Gynecologic Cancer Center of Excellence, Women’s Health Integrated Research Center and Inova Schar Cancer Institute, Inova Center for Personalized Health.
August 30th, 2016, 2:00pm, Room 1300, Harris Building.
Identification and characterization of FANCA and FANCD2 deletion variants from ten Fanconi Anemia patients and a R shiny application to display curated data from FANCD1/FANCD2 – PARP inhibitors research articles
Bioinformatics internship presentation by Apoorva Kulkarni.
Mentor: Dr. Settara Chandrasekharappa, NHGRI/NIH.
August 30th, 2016, 2:00pm, Room 1300, Harris Building.
Rare Variants Association Study for inherited retinal diseases via Exome Sequencing
Bioinformatics internship presentation by Jiayao Wang.
Mentor: Rinki Ratnapryia, Ph.D. NIH/NEI Neurobiology Neurodegeneration & Repair Laboratory.
August 30th, 2016, 2:00pm, Room 1300, Harris Building.
Development of a Python Program for De-identification of Breast Cancer Patient Data
Bioinformatics internship presentation by Abrar Albahrani.
Mentors: Dr. Deborah Berry and Krysta Chaldekas, Histopathology & Tissue Shared Resource, Lombardi Comprehensive Cancer Center, Georgetown University.
August 30th, 2016, 2:00pm, Room 1300, Harris Building.
Searching For Unique Relationships Between Human Genetic Diseases Based Upon Disease-Associated SNPs in Protein Features
Bioinformatics internship presentation by Seth Commichaux.
Mentor: Dr. Karen Ross, Biochemistry and Molecular & Cellular Biology, Georgetown University.
August 26th, 2016, 2:00pm, Room 1202, Harris Building.
Manual Review of Text-Mining Results for Accuracy and Incidences of PTM Cross-Talk
Bioinformatics internship presentation by Megan Yung.
Mentor: Dr. Karen Ross, Biochemistry and Molecular & Cellular Biology, Georgetown University.
August 26th, 2016, 2:00pm, Room 1202, Harris Building.
Integrating Clinical Breast Cancer Data into a Longitudinal REDCap Project Database
Bioinformatics internship presentation by Gaelle Sop-Kamga.
Mentors: Dr. Deborah Berry and Krysta Chaldekas, Histopathology & Tissue Shared Resource, Lombardi Comprehensive Cancer Center, Georgetown University.
July 25th, 2016, 1:00pm, Room 1202, Harris Building.
Spring 2016
Variant analysis of LY6 genes in Breast and Ovarian cancer
Bioinformatics internship presentation by Midrar Al Hossiny. Mentors: Dr. Geeta Upadhyay, Lombardi Comprehensive Cancer Center and Innovation Center for Biomedical Informatics, Department of Oncology, Georgetown University; and Dr. Yuriy Gusev, Innovation Center for Biomedical Informatics, Department of Oncology, Georgetown University. May 13th, 2016, 10:00am, Room 1300, Harris Building.
Indirect Observation of Single Nucleotide Variants in Proteomics Data
Bioinformatics internship presentation by Bixuan Wang.
Mentor: Dr. Nathan Edwards, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University.
May 13th, 2016, 10:00am, Room 1300, Harris Building.
Metabolic Biomarkers for Type I Diabetes and Cardiovascular Disease Risk in Adolescents
Bioinformatics internship presentation by Alexander Wong.
Mentor: Dr. Simina Boca, Innovation Center for Biomedical Informatics, Department of Oncology, Georgetown University.
May 13th, 2016, 10:00am, Room 1300, Harris Building.
Graphical User Interface for Analyzing Optomotor Response in Mice
Bioinformatics internship presentation by Walid Chatila.
Mentor: Dr. Tudor C. Badea, NEI (NIH).
May 13th, 2016, 10:00am, Room 1300, Harris Building.
OpID: Opportunistic Infections mobile application for immunocompromised patients
Bioinformatics internship presentation by Mohammad Shahbaz Khan.
Mentor: Dr. Krystyna Helena Szymczyk, Bioinformatics Scientist, NIAID (NIH).
April 29th, 2016, 2:00pm, Room 1202, Harris Building.
Fall 2016
Small Molecule Metabolites as Predictive Biomarkers for Cardiovascular Risk of Exposure to 16O Radiation
Bioinformatics internship presentation by Khyati Mehta.
Mentor: Dr. Amrita Cheema, Department of Oncology and Biochemistry and Molecular & Cellular Biology; Co-Director of Proteomics and Metabolomics Shared Resource, Georgetown University Medical Center.
December 14th, 2016, 2:00pm, Room 341, Basic Science.
Informatics View of Inflammatory Bowel Disease
Bioinformatics internship presentation by Christopher Greco.
Mentor: Dr. Sona Vasudevan, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University.
December 14th, 2016, 2:00pm, Room 341, Basic Science.
The relationship between autism spectrum disorder and calcium signaling
Bioinformatics internship presentation by Leena Nezamuldeen.
Mentor: Dr. Karen Ross, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University.
December 14th, 2016, 2:00pm, Room 341, Basic Science.
Summer 2016
Replacing Pedigree Error Analysis, Using Phased Linked Reads to Identify False Genotypes
Bioinformatics internship presentation by Zhezhen Wang.
Mentors: Dr. Justin Zook, NIST and Dr. Nathan Edwards, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University.
August 30th, 2016, 2:00pm, Room 1300, Harris Building.
ChIP-Seq data analysis pipeline development in a breast cancer study
Bioinformatics internship presentation by Nan Hu.
Mentors: Dr. Robert Clarke and Lu Jin, Department of Oncology and Lombardi Comprehensive Cancer Center, Georgetown University.
August 30th, 2016, 2:00pm, Room 1300, Harris Building.
Approaches for Annotation of Endogenous Retrovirus Elements
Bioinformatics internship presentation by Olumuyiwa Daramola.
Mentor: Dr. Arifa Khan, CBER, U.S. Food and Drug Administration.
August 30th, 2016, 2:00pm, Room 1300, Harris Building.
Data Migration from the Legacy Familial Cancer Registry (FCR) Database to the New REDCap Database System
Bioinformatics internship presentation by Mustafa Albahrani.
Mentor: Erin Carney, Nontherapeutic Subject Registry, Lombardi Comprehensive Cancer Center, Georgetown University.
August 30th, 2016, 2:00pm, Room 1300, Harris Building.
Application of RNA-sequencing for characterization of hepatocellular carcinoma
Bioinformatics internship presentation by Maedeh Mohammadnetaj.
Mentor: Dr. Habtom Ressom, Department of Oncology, Lombardi Comprehensive Cancer Center, Georgetown University.
August 30th, 2016, 2:00pm, Room 1300, Harris Building.
Optimization of a SWATH data acquisition method on a Q-Exactive MS for label-free, global proteomics
Bioinformatics internship presentation by Dave Mitchel.
Mentors: Drs. Brian L. Hood, Thomas P. Conrads, and Nicholas W. Bateman; DOD Gynecologic Cancer Center of Excellence, Women’s Health Integrated Research Center and Inova Schar Cancer Institute, Inova Center for Personalized Health.
August 30th, 2016, 2:00pm, Room 1300, Harris Building.
Identification and characterization of FANCA and FANCD2 deletion variants from ten Fanconi Anemia patients and a R shiny application to display curated data from FANCD1/FANCD2 – PARP inhibitors research articles
Bioinformatics internship presentation by Apoorva Kulkarni.
Mentor: Dr. Settara Chandrasekharappa, NHGRI/NIH.
August 30th, 2016, 2:00pm, Room 1300, Harris Building.
Rare Variants Association Study for inherited retinal diseases via Exome Sequencing
Bioinformatics internship presentation by Jiayao Wang.
Mentor: Rinki Ratnapryia, Ph.D. NIH/NEI Neurobiology Neurodegeneration & Repair Laboratory.
August 30th, 2016, 2:00pm, Room 1300, Harris Building.
Development of a Python Program for De-identification of Breast Cancer Patient Data
Bioinformatics internship presentation by Abrar Albahrani.
Mentors: Dr. Deborah Berry and Krysta Chaldekas, Histopathology & Tissue Shared Resource, Lombardi Comprehensive Cancer Center, Georgetown University.
August 30th, 2016, 2:00pm, Room 1300, Harris Building.
Searching For Unique Relationships Between Human Genetic Diseases Based Upon Disease-Associated SNPs in Protein Features
Bioinformatics internship presentation by Seth Commichaux.
Mentor: Dr. Karen Ross, Biochemistry and Molecular & Cellular Biology, Georgetown University.
August 26th, 2016, 2:00pm, Room 1202, Harris Building.
Manual Review of Text-Mining Results for Accuracy and Incidences of PTM Cross-Talk
Bioinformatics internship presentation by Megan Yung.
Mentor: Dr. Karen Ross, Biochemistry and Molecular & Cellular Biology, Georgetown University.
August 26th, 2016, 2:00pm, Room 1202, Harris Building.
Integrating Clinical Breast Cancer Data into a Longitudinal REDCap Project Database
Bioinformatics internship presentation by Gaelle Sop-Kamga.
Mentors: Dr. Deborah Berry and Krysta Chaldekas, Histopathology & Tissue Shared Resource, Lombardi Comprehensive Cancer Center, Georgetown University.
July 25th, 2016, 1:00pm, Room 1202, Harris Building.
Spring 2016
Variant analysis of LY6 genes in Breast and Ovarian cancer
Bioinformatics internship presentation by Midrar Al Hossiny. Mentors: Dr. Geeta Upadhyay, Lombardi Comprehensive Cancer Center and Innovation Center for Biomedical Informatics, Department of Oncology, Georgetown University; and Dr. Yuriy Gusev, Innovation Center for Biomedical Informatics, Department of Oncology, Georgetown University. May 13th, 2016, 10:00am, Room 1300, Harris Building.
Indirect Observation of Single Nucleotide Variants in Proteomics Data
Bioinformatics internship presentation by Bixuan Wang.
Mentor: Dr. Nathan Edwards, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University.
May 13th, 2016, 10:00am, Room 1300, Harris Building.
Metabolic Biomarkers for Type I Diabetes and Cardiovascular Disease Risk in Adolescents
Bioinformatics internship presentation by Alexander Wong.
Mentor: Dr. Simina Boca, Innovation Center for Biomedical Informatics, Department of Oncology, Georgetown University.
May 13th, 2016, 10:00am, Room 1300, Harris Building.
Graphical User Interface for Analyzing Optomotor Response in Mice
Bioinformatics internship presentation by Walid Chatila.
Mentor: Dr. Tudor C. Badea, NEI (NIH).
May 13th, 2016, 10:00am, Room 1300, Harris Building.
OpID: Opportunistic Infections mobile application for immunocompromised patients
Bioinformatics internship presentation by Mohammad Shahbaz Khan.
Mentor: Dr. Krystyna Helena Szymczyk, Bioinformatics Scientist, NIAID (NIH).
April 29th, 2016, 2:00pm, Room 1202, Harris Building.
Fall 2015
Faster enumeration of amino-acid tags for peptide tandem mass-spectra
Bioinformatics internship presentation by Gabriele Dani.
Mentor: Dr. Nathan Edwards, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University.
December 18th, 2015, 2:00pm, Room 1300, Harris Building.
Bioinformatics-aided Strategies for Antibody Engineering
Bioinformatics internship presentation by Angelica Ochoa.
Mentors: Dr. Lu Shan & Dr. Melissa Damschroder, Antibody Discovery and Protein Engineering, MedImmune, LLC.
December 18th, 2015, 2:00pm, Room 1300, Harris Building.
Analyze the role of HAI-2 N-Glycosylation in matriptase activation mechanism
Bioinformatics internship presentation by Ru Jia.
Mentor: Dr. Chen-Yong Lin, Lombardi Comprehensive Cancer Center, Georgetown University.
December 4th, 2015, 2:00pm-2:30pm, Room 1202, Harris Building.
Summer 2015
RNA2DNAlign: A TOOL TO IDENTIFY SNVs IMPLICATED IN REGULATORY MECHANISMS THROUGH ALIGNMENT OF NORMAL AND TUMOR RNA AND DNA
Bioinformatics internship presentation by Nawaf Alomran.
Mentor: Dr. Anelia Horvath, Department of Biochemistry and Molecular Medicine, George Washington University.
September 1st, 3:40-4:00pm, Room 1300, Harris Building.
In silico phosphoproteomic study: discrepancy of DCA effectiveness as a possible pyruvate dehydrogenase kinase inhibitor in the treatment of breast and ovarian cancers
Bioinformatics internship presentation by Abdelrahman El-Sayed.
Mentor: Dr. Karen Ross, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University.
September 1st, 3:20-3:40pm, Room 1300, Harris Building.
Gene set enrichment with correlation of gene expression and its translated protein abundance in colorectal cancer study
Bioinformatics internship presentation by Xu Liu.
Mentor: Dr. Nathan Edwards, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University.
September 1st, 3:00-3:20pm, Room 1300, Harris Building.
Peptide-based Clustering for Determination of Colorectal Cancer Subtypes
Bioinformatics internship presentation by Amina Jackson.
Mentor: Dr. Nathan Edwards, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University.
September 1st, 4:00-4:20pm, Room 1300, Harris Building.
Comparison of Tools for the Intensity-Based Quantification of Proteomic Data
Zack Heins ( Mentor : Dr . Renee Olano , Bioinformatics Specialist , National Institute of Allergy and Infectious Diseases , NIH ) September 1st , 2015 , 2 : 40 – 3 : 00pm…
Gulf War Illness (GWI) Metabolomic Analysis
Bioinformatics internship presentation by Kelvin Carrasquillo-Carrión.
Mentor: Dr. Simina Boca, Innovation Center for Biomedical Informatics, Department of Oncology, Georgetown University.
September 1st, 2:20-2:40pm, Room 1300, Harris Building.
Systems Biology analysis of Gender specific Molecular Biomarkers in Human Cancer, based on GDOC-Plus study collection
Bioinformatics internship presentation by Payal Banerjee.
Mentor: Dr. Yuriy Gusev, Innovation Center for Biomedical Informatics, Department of Oncology, Georgetown University.
September 1st, 2:00-2:20pm, Room 1300, Harris Building.
Phylomics: A new approach to understand pancreatic cancer development at the molecular level
Mukta Joshi ( Mentor : Dr . Sona Vasudevan , Department of Biochemistry and Molecular & amp ; Cellular Biology , Georgetown University ) August 11th , 2015 , 2 : 00pm – 2…
Spring 2015
Identification of colorectal cancer subtypes
Bioinformatics internship presentation by Alhussin Binsaleh.
Mentor: Dr. Nathan Edwards, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University.
May 5th, 2:00pm-2:30pm, Room 1202, Harris Building.
A Web-based User Interface For Microorganism Identification
Bioinformatics internship presentation by Mingda Jin.
Mentor: Dr. Nathan Edwards, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University.
April 24th, 2:00pm-2:30pm, Room 1202, Harris Building.
Fall 2014
Is Clinical Proteomics Data Personally Identifiable Information?
Bioinformatics internship presentation by Safiyah Murray.
Mentor: Dr. Nathan Edwards, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University.
December 5th, 1:00pm-1:30pm, Room 1202, Harris Building.
Summer 2014
A sequencing approach to refine the PEAR1 locus in platelet aggregation
Prabhakaran Gangadharan ( Mentor : Dr . Rasika Mathias , Division of Allergy and Clinical Immunology , Johns Hopkins University School of Medicine ) August 26th , 3…
Molecular Classification of Vaccine Adverse Events
Bioinformatics internship presentations by Zebasil Teshale.
Mentor: Dr. Peter McGarvey, Protein Information Resource, Georgetown University.
August 26th, 2:40pm-3:00pm Room 1300, Harris Building.
Regulation of proprotein convertase activity by substrate glycosylation and related genomic variants
Bioinformatics internship presentation by Laila Al-washahi.
Mentor: Dr. Rado Goldman, Department of Oncology, Georgetown University.
August 26th, 2pm-2:20pm Room 1300, Harris Building.
Is NoSQL for Bioinformatics?
Bioinformatics internship presentation by Shiyang Yuan.
Mentor: Dr. Sheng-Chih Chen, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University.
August 26th, 2pm-4:30pm Room 1300, Harris Building.
Propagation of glycopeptide identifications using spectra similarity networks
Bioinformatics internship presentation by Junyuan Zheng.
Mentor: Dr. Nathan Edwards, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University.
August 26th, 2:20pm-2:40pm Room 1300, Harris Building.
Building a Relational Database for the Aedes albopictus Transcriptome and Application to Identification of microRNA Binding Sites
Bioinformatics internship presentation by Bridget Tripp.
Mentor: Dr. Peter Armbruster, Department of Biology, Georgetown University.
August 26th, 2pm-4:30pm Room 1300, Harris Building.
Evaluating pathogenic variants of Fanconi anemia
Bioinformatics internship presentation by Subhiksha Nandakumar.
Mentor: Dr. Settara Chandrasekharappa, National Institutes of Health.
August 26th, 3:20pm-3:40pm Room 1300, Harris Building.
Spring 2014
Detection of Annotation Errors: Sequence or Structural Similarity – Which One to Rely On?
Bioinformatics internship presentation by Kholud Almarzoki.
Mentor: Dr. C.R. Vinayaka, Protein Information Resource, Georgetown University.
May 9th, 10:30am, Room 1202, Harris Building.